Package: AICcPermanova 0.0.3

Derek Corcoran

AICcPermanova: Model Selection of PERMANOVA Models Using AICc

Provides tools for model selection and model averaging of PerMANOVA models using Akaike Information Criterion corrected for small sample sizes (AICc) and Information Theoretic criteria principles. The package is built around the PERMANOVA analysis from the 'vegan' package and provides a streamlined workflow for generating and comparing models, obtaining model weights, and summarizing results using model averaging approaches. The methods implemented in this package are based on the practical information- theoretic approach described by Burnham, K. P. and Anderson, D. R. (2002) (<doi:10.1007/b97636>).

Authors:Derek Corcoran [aut, cre]

AICcPermanova_0.0.3.tar.gz
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AICcPermanova.pdf |AICcPermanova.html
AICcPermanova/json (API)

# Install 'AICcPermanova' in R:
install.packages('AICcPermanova', repos = c('https://sustainscapes.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sustainscapes/aiccperm/issues

Pkgdown site:https://sustainscapes.github.io

On CRAN:

3.70 score 9 scripts 408 downloads 7 exports 77 dependencies

Last updated 1 years agofrom:aae87bb44b. Checks:5 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 09 2025
R-4.5-winNOTEFeb 09 2025
R-4.5-macNOTEFeb 09 2025
R-4.5-linuxNOTEFeb 09 2025
R-4.4-winOKFeb 09 2025
R-4.4-macOKFeb 09 2025
R-4.3-winOKFeb 09 2025
R-4.3-macOKFeb 09 2025

Exports:AICc_permanova2akaike_adjusted_rsqfilter_viffit_modelsmake_modelsselect_modelsVIF

Dependencies:abindbackportsbootbroomcarcarDatacliclustercodetoolscolorspacecowplotcpp11data.tableDerivdigestdoBydoParalleldplyrfansifarverforeachFormulafurrrfuturegenericsggplot2globalsgluegtableisobanditeratorslabelinglatticelifecyclelistenvlme4magrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrmunsellnlmenloptrnnetnumDerivparallellypbkrtestpermutepillarpkgconfigpurrrquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsveganviridisLitewithr

Getting started with the AICcPermanova package

Rendered fromgetting-started-with-aiccpermanova.Rmdusingknitr::rmarkdownon Feb 09 2025.

Last update: 2023-07-04
Started: 2023-04-10